Index

_

__eq__() (rpt_dosi.metadata.ClassWithMetaData method) __getitem__() (rpt_dosi.db.CycleTreatmentDatabase method) (rpt_dosi.db.PatientTreatmentDatabase method) __str__() (rpt_dosi.db.CycleTreatmentDatabase method) (rpt_dosi.db.PatientTreatmentDatabase method) (rpt_dosi.db.TimepointTreatmentDatabase method) (rpt_dosi.metadata.ClassWithMetaData method) _acquisition_datetime (rpt_dosi.db.TimepointTreatmentDatabase attribute) (rpt_dosi.images.MetaImageBase attribute) _db_data_path (rpt_dosi.db.PatientTreatmentDatabase attribute) _db_file_path (rpt_dosi.db.PatientTreatmentDatabase attribute) _debug_eq (rpt_dosi.metadata.ClassWithMetaData attribute) _first_failing_test (rpt_dosi.utils.SimpleTest attribute) _global_ok_flag (rpt_dosi.utils.SimpleTest attribute) _image_file_path (rpt_dosi.images.MetaImageBase attribute) _image_filename (rpt_dosi.images.MetaImageBase attribute) _image_header (rpt_dosi.images.MetaImageBase attribute) _info_width (rpt_dosi.metadata.ClassWithMetaData attribute) _init_required_metadata() (rpt_dosi.images.MetaImageBase method) (rpt_dosi.images.MetaImageDose method) (rpt_dosi.images.MetaImagePET method) (rpt_dosi.images.MetaImageROI method) (rpt_dosi.images.MetaImageSPECT method)

_injection_datetime (rpt_dosi.db.CycleTreatmentDatabase attribute) (rpt_dosi.images.MetaImagePET attribute) (rpt_dosi.images.MetaImageSPECT attribute) _instance_metadata_fields (rpt_dosi.metadata.ClassWithMetaData attribute) _metadata_fields (rpt_dosi.db.CycleTreatmentDatabase attribute) (rpt_dosi.db.PatientTreatmentDatabase attribute) (rpt_dosi.db.TimepointTreatmentDatabase attribute) (rpt_dosi.images.MetaImageBase attribute) (rpt_dosi.images.MetaImageROI attribute) (rpt_dosi.images.MetaImageSPECT attribute) (rpt_dosi.metadata.ClassWithMetaData attribute) _test_num (rpt_dosi.utils.SimpleTest attribute) _unit (rpt_dosi.images.MetaImageBase attribute) (rpt_dosi.images.MetaImageROI attribute) _unit_default_value (rpt_dosi.images.MetaImageBase attribute)

A

acquisition_datetime (rpt_dosi.db.TimepointTreatmentDatabase property) (rpt_dosi.images.MetaImageBase property) activity_bq (rpt_dosi.doserate.DoseRateSimulation attribute) activity_filename (rpt_dosi.doserate.DoseRateSimulation attribute) activity_image (rpt_dosi.doserate.DoseRateSimulation attribute) add_cycle() (rpt_dosi.db.PatientTreatmentDatabase method) add_dicom_ct() (rpt_dosi.db.PatientTreatmentDatabase method) add_image() (rpt_dosi.db.TimepointTreatmentDatabase method) add_image_from_file() (rpt_dosi.db.TimepointTreatmentDatabase method) add_metadata_field() (rpt_dosi.metadata.ClassWithMetaData method) add_new_cycle() (rpt_dosi.db.PatientTreatmentDatabase method) add_new_timepoint() (rpt_dosi.db.CycleTreatmentDatabase method) add_roi() (rpt_dosi.db.TimepointTreatmentDatabase method)

add_roi_from_file() (rpt_dosi.db.TimepointTreatmentDatabase method) add_rois() (rpt_dosi.db.TimepointTreatmentDatabase method) add_timepoint() (rpt_dosi.db.CycleTreatmentDatabase method) apply_itk_gauss_smoothing() (in module rpt_dosi.images) apply_threshold() (rpt_dosi.tmtv.TMTV method) are_dicts_float_equal() (in module rpt_dosi.utils) authorized_units (rpt_dosi.images.MetaImageBase attribute) (rpt_dosi.images.MetaImageCT attribute) (rpt_dosi.images.MetaImageDose attribute) (rpt_dosi.images.MetaImagePET attribute) (rpt_dosi.images.MetaImageROI attribute) (rpt_dosi.images.MetaImageSPECT attribute) auto_update_item_name() (rpt_dosi.dicom_utils.DicomSelectionGUI method)

B

body_weight_kg (rpt_dosi.db.PatientTreatmentDatabase attribute) (rpt_dosi.images.MetaImageBase attribute)

C

check_dose_rate_options() (in module rpt_dosi.doserate) check_file_metadata() (rpt_dosi.images.MetaImageBase method) check_files_exist() (rpt_dosi.db.CycleTreatmentDatabase method) (rpt_dosi.db.PatientTreatmentDatabase method) (rpt_dosi.db.TimepointTreatmentDatabase method) check_files_metadata() (rpt_dosi.db.CycleTreatmentDatabase method) (rpt_dosi.db.PatientTreatmentDatabase method) (rpt_dosi.db.TimepointTreatmentDatabase method) check_folders_exist() (rpt_dosi.db.CycleTreatmentDatabase method) (rpt_dosi.db.PatientTreatmentDatabase method) (rpt_dosi.db.TimepointTreatmentDatabase method) check_options() (rpt_dosi.dosimetry.DoseComputation method) check_required_keys() (in module rpt_dosi.utils) ClassWithMetaData (class in rpt_dosi.metadata) color_error (in module rpt_dosi.utils) columns_keys (rpt_dosi.dicom_utils.DicomSelectionGUI attribute) compare_dict() (in module rpt_dosi.utils) compute_combined_fov_extent() (in module rpt_dosi.images) compute_densities() (rpt_dosi.images.MetaImageCT method) compute_image_extent() (in module rpt_dosi.images) compute_mask() (rpt_dosi.tmtv.TMTV method) compute_scaling() (rpt_dosi.doserate.DoseRateSimulation method) compute_time_activity_curve() (in module rpt_dosi.db) compute_total_activity() (rpt_dosi.images.MetaImageSPECT method) CONTEXT_SETTINGS (in module rpt_dosi.bin.opendose_web_get_isotopes_list) (in module rpt_dosi.bin.opendose_web_get_sources_list) (in module rpt_dosi.bin.opendose_web_get_svalues) (in module rpt_dosi.bin.rpt_crop_bg) (in module rpt_dosi.bin.rpt_db_info) (in module rpt_dosi.bin.rpt_db_tac_plot) (in module rpt_dosi.bin.rpt_db_tac_triexpo) (in module rpt_dosi.bin.rpt_dicom_browse) (in module rpt_dosi.bin.rpt_dicom_select) (in module rpt_dosi.bin.rpt_dicomdir_info) (in module rpt_dosi.bin.rpt_dose) (in module rpt_dosi.bin.rpt_dose_rate) (in module rpt_dosi.bin.rpt_get_list_of_bone_rois) (in module rpt_dosi.bin.rpt_image_info) (in module rpt_dosi.bin.rpt_image_set_metadata) (in module rpt_dosi.bin.rpt_mip) (in module rpt_dosi.bin.rpt_resample_ct) (in module rpt_dosi.bin.rpt_resample_roi) (in module rpt_dosi.bin.rpt_resample_spect) (in module rpt_dosi.bin.rpt_roi_bool) (in module rpt_dosi.bin.rpt_roi_crop) (in module rpt_dosi.bin.rpt_spect_roi_statistics) (in module rpt_dosi.bin.rpt_spect_update) (in module rpt_dosi.bin.rpt_tests) (in module rpt_dosi.bin.rpt_tmtv)

convert_ct_dicom_to_image() (in module rpt_dosi.dicom_utils) convert_ct_to_densities() (in module rpt_dosi.images) convert_datetime() (in module rpt_dosi.utils) convert_dicom_to_image() (in module rpt_dosi.dicom_utils) convert_to_bq() (rpt_dosi.images.MetaImageSPECT method) convert_to_bqml() (rpt_dosi.images.MetaImageSPECT method) convert_to_suv() (rpt_dosi.images.MetaImageSPECT method) convert_to_unit() (rpt_dosi.images.MetaImageBase method) copy_or_move_image() (in module rpt_dosi.images) count_files() (in module rpt_dosi.dicom_utils) create_empty_sitk_image_from_extent() (in module rpt_dosi.images) create_test_db() (in module rpt_dosi.db) crop_to_bounding_box() (in module rpt_dosi.images) ct (rpt_dosi.dosimetry.DoseComputation attribute) (rpt_dosi.dosimetry.DoseComputationWithDoseRate attribute) ct_filename (rpt_dosi.doserate.DoseRateSimulation attribute) cut_the_head (rpt_dosi.tmtv.TMTV attribute) cut_the_head_margin_mm (rpt_dosi.tmtv.TMTV attribute) cut_the_head_roi_filename (rpt_dosi.tmtv.TMTV attribute) cycle (rpt_dosi.db.TimepointTreatmentDatabase attribute) cycle_id (rpt_dosi.db.CycleTreatmentDatabase attribute) cycle_path (rpt_dosi.db.CycleTreatmentDatabase property) cycles (rpt_dosi.db.PatientTreatmentDatabase attribute) CycleTreatmentDatabase (class in rpt_dosi.db)

D

data_dict (rpt_dosi.dicom_utils.DicomSelectionGUI attribute) db (rpt_dosi.db.CycleTreatmentDatabase attribute) db_data_path (rpt_dosi.db.PatientTreatmentDatabase property) db_file_path (rpt_dosi.db.PatientTreatmentDatabase property) db_get_time_interval() (in module rpt_dosi.db) debug_eq() (rpt_dosi.metadata.ClassWithMetaData method) decay_corrected_tac() (in module rpt_dosi.dosimetry) delete_image_metadata() (in module rpt_dosi.images) density_tolerance_gcm3 (rpt_dosi.doserate.DoseRateSimulation attribute) description (rpt_dosi.images.MetaImageBase attribute) dicom_date_to_str() (in module rpt_dosi.dicom_utils) dicom_read_acquisition_datetime() (in module rpt_dosi.dicom_utils) dicom_read_injection() (in module rpt_dosi.dicom_utils) DicomSelectionGUI (class in rpt_dosi.dicom_utils) dilate_mask() (in module rpt_dosi.images) (in module rpt_dosi.tmtv)

dose_hanscheid2017() (in module rpt_dosi.dosimetry) dose_hanscheid2017_dose_rate() (in module rpt_dosi.dosimetry) dose_hanscheid2018() (in module rpt_dosi.dosimetry) dose_hanscheid2018_dose_rate() (in module rpt_dosi.dosimetry) dose_madsen2018() (in module rpt_dosi.dosimetry) dose_madsen2018_dose_rate() (in module rpt_dosi.dosimetry) dose_rate (rpt_dosi.dosimetry.DoseComputationWithDoseRate attribute) DoseComputation (class in rpt_dosi.dosimetry) DoseComputationWithDoseRate (class in rpt_dosi.dosimetry) DoseComputationWithPhantom (class in rpt_dosi.dosimetry) DoseHanscheid2017 (class in rpt_dosi.dosimetry) DoseHanscheid2017DoseRate (class in rpt_dosi.dosimetry) DoseHanscheid2018 (class in rpt_dosi.dosimetry) DoseHanscheid2018DoseRate (class in rpt_dosi.dosimetry) DoseMadsen2018 (class in rpt_dosi.dosimetry) DoseMadsen2018DoseRate (class in rpt_dosi.dosimetry) DoseRateSimulation (class in rpt_dosi.doserate)

E

edit_cell() (rpt_dosi.dicom_utils.DicomSelectionGUI method) effective_time_h (rpt_dosi.images.MetaImageROI attribute) end_tests() (in module rpt_dosi.utils)

ensure_image_is_loaded() (rpt_dosi.images.MetaImageBase method) entry_widget (rpt_dosi.dicom_utils.DicomSelectionGUI attribute) escape_special_characters() (in module rpt_dosi.utils)

F

fatal() (in module rpt_dosi.utils) filename (rpt_dosi.images.MetaImageBase property) filter_series_description() (in module rpt_dosi.dicom_utils) filter_series_rm_modality() (in module rpt_dosi.dicom_utils) filter_studies_include_modality() (in module rpt_dosi.dicom_utils) find_closest_match() (in module rpt_dosi.utils)

find_files_containing_pattern() (in module rpt_dosi.bin.rpt_get_list_of_bone_rois) find_foci() (in module rpt_dosi.tmtv) fit_exp_linear() (in module rpt_dosi.dosimetry) from_dict() (rpt_dosi.db.CycleTreatmentDatabase method) (rpt_dosi.db.PatientTreatmentDatabase method) (rpt_dosi.db.TimepointTreatmentDatabase method) (rpt_dosi.metadata.ClassWithMetaData method)

G

gaussian_sigma (rpt_dosi.doserate.DoseRateSimulation attribute) (rpt_dosi.dosimetry.DoseComputation attribute) get_all_dropdown_options() (in module rpt_dosi.opendose) get_basename_and_extension() (in module rpt_dosi.utils) get_cycle() (rpt_dosi.db.PatientTreatmentDatabase method) get_data_folder() (in module rpt_dosi.utils) get_dose_computation_class() (in module rpt_dosi.dosimetry) get_files_in_folder() (in module rpt_dosi.dicom_utils) get_final_ok() (rpt_dosi.utils.SimpleTest static method) get_first_failing_test() (rpt_dosi.utils.SimpleTest static method) get_gafita2019_threshold() (rpt_dosi.tmtv.TMTV method) get_image_file_path() (rpt_dosi.db.TimepointTreatmentDatabase method) get_label_centroids() (in module rpt_dosi.tmtv) get_match_in_list() (in module rpt_dosi.opendose) get_metaimage() (rpt_dosi.db.TimepointTreatmentDatabase method) get_metaimage_class_from_type() (in module rpt_dosi.images) get_number_of_tests() (rpt_dosi.utils.SimpleTest static method) get_phantom() (rpt_dosi.dosimetry.DoseComputationWithPhantom method) get_pixel_value_range() (in module rpt_dosi.images) get_removed_rois_mean_value() (rpt_dosi.tmtv.TMTV method) get_roi() (rpt_dosi.db.TimepointTreatmentDatabase method) get_roi_path() (rpt_dosi.db.TimepointTreatmentDatabase method) get_rpt_data_folder() (in module rpt_dosi.opendose) get_subfolders() (in module rpt_dosi.utils) get_svalue_and_mass_scaling() (in module rpt_dosi.opendose) get_svalue_data_filename() (in module rpt_dosi.opendose) get_tests_data_folder() (in module rpt_dosi.utils) get_tests_folder() (in module rpt_dosi.utils) get_tests_folders() (in module rpt_dosi.utils) get_tests_output_folder() (in module rpt_dosi.utils) get_time_from_injection_h() (in module rpt_dosi.images)

get_timepoint() (rpt_dosi.db.CycleTreatmentDatabase method) get_timepoint_output_folder() (in module rpt_dosi.doserate) go() (in module rpt_dosi.bin.opendose_web_get_isotopes_list) (in module rpt_dosi.bin.opendose_web_get_sources_list) (in module rpt_dosi.bin.opendose_web_get_svalues) (in module rpt_dosi.bin.rpt_crop_bg) (in module rpt_dosi.bin.rpt_db_info) (in module rpt_dosi.bin.rpt_db_tac_plot) (in module rpt_dosi.bin.rpt_db_tac_triexpo) (in module rpt_dosi.bin.rpt_dicom_browse) (in module rpt_dosi.bin.rpt_dicom_select) (in module rpt_dosi.bin.rpt_dicomdir_info) (in module rpt_dosi.bin.rpt_dose) (in module rpt_dosi.bin.rpt_dose_rate) (in module rpt_dosi.bin.rpt_get_list_of_bone_rois) (in module rpt_dosi.bin.rpt_image_info) (in module rpt_dosi.bin.rpt_image_set_metadata) (in module rpt_dosi.bin.rpt_mip) (in module rpt_dosi.bin.rpt_resample_ct) (in module rpt_dosi.bin.rpt_resample_roi) (in module rpt_dosi.bin.rpt_resample_spect) (in module rpt_dosi.bin.rpt_roi_bool) (in module rpt_dosi.bin.rpt_roi_crop) (in module rpt_dosi.bin.rpt_spect_roi_statistics) (in module rpt_dosi.bin.rpt_spect_update) (in module rpt_dosi.bin.rpt_tests) (in module rpt_dosi.bin.rpt_tmtv) guess_isotope_id() (in module rpt_dosi.opendose) guess_phantom_and_isotope() (in module rpt_dosi.opendose) guess_phantom_id() (in module rpt_dosi.opendose) guess_source_id() (in module rpt_dosi.opendose)

I

icrp_phantom_name (rpt_dosi.dosimetry.DoseComputationWithPhantom attribute) icrp_radionuclide (rpt_dosi.dosimetry.DoseComputationWithPhantom attribute) image (rpt_dosi.images.MetaImageBase attribute) image_builders (in module rpt_dosi.images) image_file_path (rpt_dosi.images.MetaImageBase property) image_has_this_spacing() (in module rpt_dosi.images) image_is_loaded() (rpt_dosi.images.MetaImageBase method) image_roi_stats() (in module rpt_dosi.images) image_set_background() (in module rpt_dosi.images) image_type (rpt_dosi.images.MetaImageBase attribute) (rpt_dosi.images.MetaImageCT attribute) (rpt_dosi.images.MetaImageDose attribute) (rpt_dosi.images.MetaImagePET attribute) (rpt_dosi.images.MetaImageROI attribute) (rpt_dosi.images.MetaImageSPECT attribute) images (rpt_dosi.db.TimepointTreatmentDatabase attribute) images_have_same_domain() (in module rpt_dosi.images) images_have_same_spacing() (in module rpt_dosi.images) indent() (in module rpt_dosi.utils) info() (rpt_dosi.db.CycleTreatmentDatabase method) (rpt_dosi.db.PatientTreatmentDatabase method) (rpt_dosi.db.TimepointTreatmentDatabase method) (rpt_dosi.images.MetaImageBase method) (rpt_dosi.images.MetaImageROI method) (rpt_dosi.images.MetaImageSPECT method) (rpt_dosi.metadata.ClassWithMetaData method)

init_dose_rate_options() (in module rpt_dosi.doserate) init_gate_simulation() (rpt_dosi.doserate.DoseRateSimulation method) init_resampling() (rpt_dosi.dosimetry.DoseComputation method) (rpt_dosi.dosimetry.DoseComputationWithDoseRate method) init_results() (rpt_dosi.dosimetry.DoseComputation method) injection_activity_mbq (rpt_dosi.db.CycleTreatmentDatabase attribute) (rpt_dosi.images.MetaImagePET attribute) (rpt_dosi.images.MetaImageSPECT attribute) injection_datetime (rpt_dosi.db.CycleTreatmentDatabase property) (rpt_dosi.images.MetaImageSPECT property) injection_radionuclide (rpt_dosi.db.CycleTreatmentDatabase attribute) intensity_threshold (rpt_dosi.tmtv.TMTV attribute) is_mhd_file() (in module rpt_dosi.images) is_number() (in module rpt_dosi.tmtv)

J

json_filename (rpt_dosi.dicom_utils.DicomSelectionGUI attribute)

L

left_frame (rpt_dosi.dicom_utils.DicomSelectionGUI attribute) list_dicom_studies_and_series() (in module rpt_dosi.dicom_utils)

load_from_json() (rpt_dosi.dicom_utils.DicomSelectionGUI method) (rpt_dosi.metadata.ClassWithMetaData method)

M

make_data_tree() (rpt_dosi.dicom_utils.DicomSelectionGUI method) mass_g (rpt_dosi.images.MetaImageROI attribute) metadata_exists() (in module rpt_dosi.images) metadata_file_path (rpt_dosi.images.MetaImageBase property) MetaImageBase (class in rpt_dosi.images) MetaImageCT (class in rpt_dosi.images) MetaImageDose (class in rpt_dosi.images) MetaImagePET (class in rpt_dosi.images) MetaImageROI (class in rpt_dosi.images) MetaImageSPECT (class in rpt_dosi.images) method_name (rpt_dosi.dosimetry.DoseComputationWithPhantom attribute) mhd_copy_or_move() (in module rpt_dosi.images) mhd_find_raw_file() (in module rpt_dosi.images) mhd_replace_raw() (in module rpt_dosi.images) minimal_volume_cc (rpt_dosi.tmtv.TMTV attribute) mip() (in module rpt_dosi.images) module rpt_dosi rpt_dosi.bin rpt_dosi.bin.opendose_web_get_isotopes_list rpt_dosi.bin.opendose_web_get_sources_list rpt_dosi.bin.opendose_web_get_svalues rpt_dosi.bin.rpt_crop_bg rpt_dosi.bin.rpt_db_info rpt_dosi.bin.rpt_db_tac_plot rpt_dosi.bin.rpt_db_tac_triexpo rpt_dosi.bin.rpt_dicom_browse rpt_dosi.bin.rpt_dicom_select rpt_dosi.bin.rpt_dicomdir_info rpt_dosi.bin.rpt_dose rpt_dosi.bin.rpt_dose_rate rpt_dosi.bin.rpt_get_list_of_bone_rois rpt_dosi.bin.rpt_image_info rpt_dosi.bin.rpt_image_set_metadata rpt_dosi.bin.rpt_mip rpt_dosi.bin.rpt_resample_ct rpt_dosi.bin.rpt_resample_roi rpt_dosi.bin.rpt_resample_spect rpt_dosi.bin.rpt_roi_bool rpt_dosi.bin.rpt_roi_crop rpt_dosi.bin.rpt_spect_roi_statistics rpt_dosi.bin.rpt_spect_update rpt_dosi.bin.rpt_tests rpt_dosi.bin.rpt_tmtv rpt_dosi.db rpt_dosi.dicom_utils rpt_dosi.doserate rpt_dosi.dosimetry rpt_dosi.images rpt_dosi.metadata rpt_dosi.opendose rpt_dosi.tmtv rpt_dosi.utils

N

name (rpt_dosi.dosimetry.DoseComputation attribute) (rpt_dosi.dosimetry.DoseHanscheid2017 attribute) (rpt_dosi.dosimetry.DoseHanscheid2017DoseRate attribute) (rpt_dosi.dosimetry.DoseHanscheid2018 attribute) (rpt_dosi.dosimetry.DoseHanscheid2018DoseRate attribute) (rpt_dosi.dosimetry.DoseMadsen2018 attribute) (rpt_dosi.dosimetry.DoseMadsen2018DoseRate attribute) (rpt_dosi.images.MetaImageROI attribute)

new_metaimage() (in module rpt_dosi.images) next_cycle_id() (in module rpt_dosi.dicom_utils) next_tp_id() (in module rpt_dosi.dicom_utils) number_of_images() (rpt_dosi.db.PatientTreatmentDatabase method) number_of_rois() (rpt_dosi.db.PatientTreatmentDatabase method) number_of_timepoints() (rpt_dosi.db.PatientTreatmentDatabase method)

O

on_double_click() (rpt_dosi.dicom_utils.DicomSelectionGUI method)

output_folder (rpt_dosi.doserate.DoseRateSimulation attribute)

P

patient_id (rpt_dosi.db.PatientTreatmentDatabase attribute) PatientTreatmentDatabase (class in rpt_dosi.db) phantom (rpt_dosi.dosimetry.DoseComputationWithPhantom attribute) population_mean_liver (rpt_dosi.tmtv.TMTV attribute)

print_colored() (in module rpt_dosi.dicom_utils) print_current_selection() (in module rpt_dosi.dicom_utils) print_series() (in module rpt_dosi.dicom_utils) print_tests() (in module rpt_dosi.utils)

R

radionuclide (rpt_dosi.doserate.DoseRateSimulation attribute) (rpt_dosi.dosimetry.DoseComputation attribute) read() (rpt_dosi.db.PatientTreatmentDatabase method) (rpt_dosi.images.MetaImageBase method) read_and_check_input_infos() (in module rpt_dosi.utils) read_ct() (in module rpt_dosi.images) read_dose() (in module rpt_dosi.images) read_dose_rate_options() (in module rpt_dosi.doserate) read_image_header() (rpt_dosi.images.MetaImageBase method) read_list_of_rois() (in module rpt_dosi.images) read_metadata() (rpt_dosi.images.MetaImageBase method) read_metaimage() (in module rpt_dosi.images) read_metaimage_type_from_metadata() (in module rpt_dosi.images) read_pet() (in module rpt_dosi.images) read_roi() (in module rpt_dosi.images) read_spect() (in module rpt_dosi.images) read_svalue_and_mass() (in module rpt_dosi.opendose) remove_cycle() (rpt_dosi.db.PatientTreatmentDatabase method) remove_small_areas() (in module rpt_dosi.tmtv) removed_mask (rpt_dosi.tmtv.TMTV attribute) require_unit() (rpt_dosi.images.MetaImageBase method) resample() (rpt_dosi.doserate.DoseRateSimulation method) resample_ct_like() (in module rpt_dosi.images) resample_ct_spacing() (in module rpt_dosi.images) resample_dose_like() (in module rpt_dosi.images) resample_itk_image_like() (in module rpt_dosi.images) resample_itk_image_spacing() (in module rpt_dosi.images) resample_like (rpt_dosi.doserate.DoseRateSimulation attribute) (rpt_dosi.dosimetry.DoseComputation attribute) resample_roi_like() (in module rpt_dosi.images) resample_roi_spacing() (in module rpt_dosi.images) resample_spect_like() (in module rpt_dosi.images) resample_spect_spacing() (in module rpt_dosi.images) resampled_activity_filename (rpt_dosi.doserate.DoseRateSimulation attribute) resampled_ct_filename (rpt_dosi.doserate.DoseRateSimulation attribute) right_frame (rpt_dosi.dicom_utils.DicomSelectionGUI attribute) roi_boolean_operation() (in module rpt_dosi.images) rois (rpt_dosi.db.TimepointTreatmentDatabase attribute) rois_path (rpt_dosi.db.TimepointTreatmentDatabase property) rois_to_keep (rpt_dosi.tmtv.TMTV attribute) rois_to_keep_default() (in module rpt_dosi.tmtv) rois_to_keep_folder (rpt_dosi.tmtv.TMTV attribute) rois_to_remove (rpt_dosi.tmtv.TMTV attribute) rois_to_remove_default() (in module rpt_dosi.tmtv) rois_to_remove_folder (rpt_dosi.tmtv.TMTV attribute) rpt_dosi module rpt_dosi.bin module rpt_dosi.bin.opendose_web_get_isotopes_list module rpt_dosi.bin.opendose_web_get_sources_list module rpt_dosi.bin.opendose_web_get_svalues module rpt_dosi.bin.rpt_crop_bg module rpt_dosi.bin.rpt_db_info module rpt_dosi.bin.rpt_db_tac_plot module rpt_dosi.bin.rpt_db_tac_triexpo module

rpt_dosi.bin.rpt_dicom_browse module rpt_dosi.bin.rpt_dicom_select module rpt_dosi.bin.rpt_dicomdir_info module rpt_dosi.bin.rpt_dose module rpt_dosi.bin.rpt_dose_rate module rpt_dosi.bin.rpt_get_list_of_bone_rois module rpt_dosi.bin.rpt_image_info module rpt_dosi.bin.rpt_image_set_metadata module rpt_dosi.bin.rpt_mip module rpt_dosi.bin.rpt_resample_ct module rpt_dosi.bin.rpt_resample_roi module rpt_dosi.bin.rpt_resample_spect module rpt_dosi.bin.rpt_roi_bool module rpt_dosi.bin.rpt_roi_crop module rpt_dosi.bin.rpt_spect_roi_statistics module rpt_dosi.bin.rpt_spect_update module rpt_dosi.bin.rpt_tests module rpt_dosi.bin.rpt_tmtv module rpt_dosi.db module rpt_dosi.dicom_utils module rpt_dosi.doserate module rpt_dosi.dosimetry module rpt_dosi.images module rpt_dosi.metadata module rpt_dosi.opendose module rpt_dosi.tmtv module rpt_dosi.utils module RptError run() (rpt_dosi.dosimetry.DoseComputation method) (rpt_dosi.dosimetry.DoseHanscheid2017 method) (rpt_dosi.dosimetry.DoseHanscheid2017DoseRate method) (rpt_dosi.dosimetry.DoseHanscheid2018 method) (rpt_dosi.dosimetry.DoseHanscheid2018DoseRate method) (rpt_dosi.dosimetry.DoseMadsen2018 method) (rpt_dosi.dosimetry.DoseMadsen2018DoseRate method) run_cmd() (in module rpt_dosi.utils) run_vv() (rpt_dosi.dicom_utils.DicomSelectionGUI method)

S

save_button (rpt_dosi.dicom_utils.DicomSelectionGUI attribute) save_edit() (rpt_dosi.dicom_utils.DicomSelectionGUI method) save_to_json() (rpt_dosi.dicom_utils.DicomSelectionGUI method) (rpt_dosi.metadata.ClassWithMetaData method) scale_to_absorbed_dose_rate() (in module rpt_dosi.doserate) scaling (rpt_dosi.dosimetry.DoseComputationWithDoseRate attribute) select_for_cycle() (in module rpt_dosi.dicom_utils) set_metadata() (rpt_dosi.metadata.ClassWithMetaData method) set_time_from_injection_h() (in module rpt_dosi.images) sim_add_waterbox() (in module rpt_dosi.doserate) SimpleTest (class in rpt_dosi.utils) simu_add_activity_source() (in module rpt_dosi.doserate) simu_add_ct() (in module rpt_dosi.doserate) simu_add_dose_actor() (in module rpt_dosi.doserate) simu_default_init() (in module rpt_dosi.doserate)

sort_series_by_date() (in module rpt_dosi.dicom_utils) spect (rpt_dosi.dosimetry.DoseComputation attribute) start_test() (in module rpt_dosi.utils) stop_current_test() (rpt_dosi.utils.SimpleTest static method) stop_test() (in module rpt_dosi.utils) store_dicom_information() (in module rpt_dosi.dicom_utils) sync_field_db_to_image() (in module rpt_dosi.metadata) sync_field_image_db() (in module rpt_dosi.metadata) sync_field_image_db_auto() (in module rpt_dosi.metadata) sync_field_image_db_check() (in module rpt_dosi.metadata) sync_field_image_to_db() (in module rpt_dosi.metadata) sync_metadata_image() (rpt_dosi.db.TimepointTreatmentDatabase method) sync_metadata_images() (rpt_dosi.db.CycleTreatmentDatabase method) (rpt_dosi.db.PatientTreatmentDatabase method) (rpt_dosi.db.TimepointTreatmentDatabase method) sync_metadata_roi() (rpt_dosi.db.TimepointTreatmentDatabase method)

T

table_density (rpt_dosi.doserate.DoseRateSimulation attribute) table_mat (rpt_dosi.doserate.DoseRateSimulation attribute) test_compare_images() (in module rpt_dosi.images) test_compare_json_doses() (in module rpt_dosi.dosimetry) test_ok() (in module rpt_dosi.utils) time_from_injection_h (rpt_dosi.db.TimepointTreatmentDatabase property) (rpt_dosi.images.MetaImageSPECT property) timepoint_id (rpt_dosi.db.TimepointTreatmentDatabase attribute) timepoint_path (rpt_dosi.db.TimepointTreatmentDatabase property) timepoints (rpt_dosi.db.CycleTreatmentDatabase attribute) TimepointTreatmentDatabase (class in rpt_dosi.db) TMTV (class in rpt_dosi.tmtv) tmtv_apply_mask() (in module rpt_dosi.tmtv)

tmtv_mask_cut_the_head() (in module rpt_dosi.tmtv) tmtv_mask_keep_rois() (in module rpt_dosi.tmtv) tmtv_mask_np (rpt_dosi.tmtv.TMTV attribute) tmtv_mask_remove_rois() (in module rpt_dosi.tmtv) to_dict() (rpt_dosi.db.CycleTreatmentDatabase method) (rpt_dosi.db.PatientTreatmentDatabase method) (rpt_dosi.db.TimepointTreatmentDatabase method) (rpt_dosi.metadata.ClassWithMetaData method) tree (rpt_dosi.dicom_utils.DicomSelectionGUI attribute) triexpo_apply() (in module rpt_dosi.dosimetry) triexpo_apply_from_dict() (in module rpt_dosi.dosimetry) triexpo_fit() (in module rpt_dosi.dosimetry) triexpo_param_from_dict() (in module rpt_dosi.dosimetry) triexpo_rmse() (in module rpt_dosi.dosimetry)

U

unit (rpt_dosi.images.MetaImageBase property) (rpt_dosi.images.MetaImageCT attribute) unit_converter (rpt_dosi.images.MetaImageBase attribute) (rpt_dosi.images.MetaImageSPECT attribute) unit_default_value (rpt_dosi.images.MetaImageBase property) unit_default_values (rpt_dosi.images.MetaImageBase attribute) (rpt_dosi.images.MetaImageCT attribute) (rpt_dosi.images.MetaImageDose attribute) (rpt_dosi.images.MetaImagePET attribute) (rpt_dosi.images.MetaImageROI attribute) (rpt_dosi.images.MetaImageSPECT attribute)

update_data_dict() (rpt_dosi.dicom_utils.DicomSelectionGUI method) update_mass_and_volume() (rpt_dosi.images.MetaImageROI method) update_selected() (in module rpt_dosi.dicom_utils)

V

validate_spacing() (in module rpt_dosi.images) verbose (rpt_dosi.tmtv.TMTV attribute)

volume_cc (rpt_dosi.images.MetaImageROI attribute) voxel_volume_cc (rpt_dosi.images.MetaImageBase property) voxel_volume_ml (rpt_dosi.images.MetaImageBase property)

W

warning() (in module rpt_dosi.utils) web_svalues_get_driver() (in module rpt_dosi.opendose) web_svalues_query_data() (in module rpt_dosi.opendose) web_svalues_select_phantom() (in module rpt_dosi.opendose) write() (rpt_dosi.db.PatientTreatmentDatabase method) (rpt_dosi.images.MetaImageBase method)

write_metadata() (rpt_dosi.images.MetaImageBase method) (rpt_dosi.images.MetaImageROI method) (rpt_dosi.images.MetaImageSPECT method) write_metadata_images() (rpt_dosi.db.CycleTreatmentDatabase method) (rpt_dosi.db.PatientTreatmentDatabase method) (rpt_dosi.db.TimepointTreatmentDatabase method)