rpt_dosi.dicom_utils
====================

.. py:module:: rpt_dosi.dicom_utils


Classes
-------

.. autoapisummary::

   rpt_dosi.dicom_utils.DicomSelectionGUI


Functions
---------

.. autoapisummary::

   rpt_dosi.dicom_utils.dicom_read_acquisition_datetime
   rpt_dosi.dicom_utils.dicom_date_to_str
   rpt_dosi.dicom_utils.dicom_read_injection
   rpt_dosi.dicom_utils.count_files
   rpt_dosi.dicom_utils.list_dicom_studies_and_series
   rpt_dosi.dicom_utils.store_dicom_information
   rpt_dosi.dicom_utils.sort_series_by_date
   rpt_dosi.dicom_utils.print_series
   rpt_dosi.dicom_utils.filter_studies_include_modality
   rpt_dosi.dicom_utils.filter_series_rm_modality
   rpt_dosi.dicom_utils.filter_series_description
   rpt_dosi.dicom_utils.next_cycle_id
   rpt_dosi.dicom_utils.next_tp_id
   rpt_dosi.dicom_utils.select_for_cycle
   rpt_dosi.dicom_utils.print_colored
   rpt_dosi.dicom_utils.print_current_selection
   rpt_dosi.dicom_utils.update_selected
   rpt_dosi.dicom_utils.convert_ct_dicom_to_image
   rpt_dosi.dicom_utils.get_files_in_folder
   rpt_dosi.dicom_utils.convert_dicom_to_image


Module Contents
---------------

.. py:function:: dicom_read_acquisition_datetime(ds)

.. py:function:: dicom_date_to_str(date, time)

.. py:function:: dicom_read_injection(ds)

   (0054, 0016)  Radiopharmaceutical Information Sequence  1 item(s) ----
      (0018, 0031) Radiopharmaceutical                 LO: 'LU177'
      (0018, 1071) Radiopharmaceutical Volume          DS: '9.5'
      (0018, 1072) Radiopharmaceutical Start Time      TM: '100400.000'
      (0018, 1073) Radiopharmaceutical Stop Time       TM: '100400.000'
      (0018, 1074) Radionuclide Total Dose             DS: '7257.568359375'
      (0018, 1075) Radionuclide Half Life              DS: '574380.0'
      (0018, 1078) Radiopharmaceutical Start DateTime  DT: '20231012100400'
      (0018, 1079) Radiopharmaceutical Stop DateTime   DT: '20231012100400'
      (0054, 0300)  Radionuclide Code Sequence  1 item(s) ----


.. py:function:: count_files(directory)

.. py:function:: list_dicom_studies_and_series(directory)

.. py:function:: store_dicom_information(ds)

.. py:function:: sort_series_by_date(studies)

.. py:function:: print_series(series)

.. py:function:: filter_studies_include_modality(studies, mod, verbose=True)

.. py:function:: filter_series_rm_modality(studies, mod, verbose=True)

.. py:function:: filter_series_description(studies, modality, desc, verbose=True)

.. py:function:: next_cycle_id(current_cycle)

.. py:function:: next_tp_id(current_tp)

.. py:function:: select_for_cycle(series_txt)

.. py:function:: print_colored(text, color_code=33)

.. py:function:: print_current_selection(the_cycles)

.. py:function:: update_selected(cycle, series, tp_id, selected_ids)

.. py:function:: convert_ct_dicom_to_image(dicom_folder, output_filename)

.. py:class:: DicomSelectionGUI(data_dict, json_filename)

   Bases: :py:obj:`tkinter.Tk`


   Toplevel widget of Tk which represents mostly the main window
   of an application. It has an associated Tcl interpreter.


   .. py:attribute:: entry_widget
      :value: None



   .. py:attribute:: data_dict


   .. py:attribute:: json_filename


   .. py:attribute:: tree
      :value: None



   .. py:attribute:: columns_keys
      :value: None



   .. py:attribute:: left_frame


   .. py:attribute:: save_button


   .. py:attribute:: right_frame


   .. py:method:: make_data_tree(data_dict)


   .. py:method:: on_double_click(event)


   .. py:method:: run_vv(event)


   .. py:method:: edit_cell(row, column, column_name)


   .. py:method:: save_edit(row, column_name)


   .. py:method:: update_data_dict(item_id, column_name, new_value)


   .. py:method:: auto_update_item_name(row, item)


   .. py:method:: save_to_json()


   .. py:method:: load_from_json(json_filename)


.. py:function:: get_files_in_folder(directory)

.. py:function:: convert_dicom_to_image(input_dicom_files, dest_file, pixel_type='float')